Software for ultra fast local DNA sequence motif search and pairwise alignment for NGS data (FASTA, FASTQ). Global:Global (GG), Global:Local (GL) alignment with statistics Local search with fast k-tuple heuristic, slower but more sensitive than BLAST GPU accelerated Smith Waterman algorithm for multiple shared-host GPUsīLASTX and BLASTP aligner based on double indexingīuchfink B, Xie C, Huson DH, Reuter K, Drost HG Position-specific iterative version CSI-BLAST more sensitive than PSI-BLAST Sequence-context specific BLAST, more sensitive than BLAST, FASTA, and SSEARCH. īurdyshaw CE, Sawyer S, Horton MD, Brook RG, Rekapalli B Distributed with the latest version of BLAST, this wrapper facilitates parallelization of the algorithm on modern hybrid architectures with many nodes and many cores within each node. NCBI compliant multinode and multicore BLAST wrapper. Local search with fast k-tuple heuristic (Basic Local Alignment Search Tool)Īltschul SF, Gish W, Miller W, Myers EW, Lipman DJ See structural alignment software for structural alignment of proteins. In accordance with that policy, we use Matomo to collect anonymised data on visits to, downloads from, and searches of this site.This list of sequence alignment software is a compilation of software tools and web portals used in pairwise sequence alignment and multiple sequence alignment. įor comments and questions, send a message to Mikita Suyama ( of this site follows EMBL's Privacy Policy. The distribution version of PAL2NAL is also available.Ĭurrent version: v14 (2 December 2011).
0 Comments
Leave a Reply. |
AuthorWrite something about yourself. No need to be fancy, just an overview. ArchivesCategories |